MishMash is governed and managed by several organizational bodies, each with specific responsibilities and roles:
- Management — Day-to-day management and coordination of MishMash activities
- Work Package Leader Group — Leads of the seven scientific work packages
- Board — Governance and and decision-making body
- Council — Strategic oversight and partner compliance
- Scientific Advisory Board — International scientific guidance and evaluation
- Stakeholder Board — Representatives from partner organisations and stakeholders